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Bioinformatics (Oxford, England)|September 20, 2022
SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type compositionAlexander Dietrich, Gregor Sturm, Lorenzo Merotto, et al.Nature Communications|May 12, 2026
Critical evaluation of drug response prediction models with DrEvalJudith Bernett, Pascal Iversen, Mario Picciani, et al.Biorxiv : the Preprint Server for Biology|April 10, 2026
Detection of Candidate Circular RNAs to Monitor Anti-Hormonal Response in the Mammary GlandNico Trummer, Malte Weyrich, Paige Ryan, et al.Nanomedicine : Nanotechnology, Biology, and Medicine|January 9, 2017
Protein-based nanotoxicology assessment strategyMarlene Pedersen Elnegaard, Markus List, Helle Christiansen, et al.Bioinformatics (Oxford, England)|April 15, 2020
EpiGEN: an epistasis simulation pipelineDavid B Blumenthal, Lorenzo Viola, Markus List, et al.Nucleic Acids Research|September 22, 2017
De novo pathway-based biomarker identificationNicolas Alcaraz, Markus List, Richa Batra, et al.Bioinformatics (Oxford, England)|November 14, 2018
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasetsFlorian Schmidt, Markus List, Engin Cukuroglu, et al.British Journal of Pharmacology|December 4, 2024
DysRegNet: Patient-specific and confounder-aware dysregulated network inference towards precision therapeuticsJohannes Kersting, Olga Lazareva, Zakaria Louadi, et al.Nucleic Acids Research|May 28, 2020
EpiRegio: analysis and retrieval of regulatory elements linked to genesNina Baumgarten, Dennis Hecker, Sivarajan Karunanithi, et al.Nucleic Acids Research|May 7, 2016
KeyPathwayMinerWeb: online multi-omics network enrichmentMarkus List, Nicolas Alcaraz, Martin Dissing-Hansen, et al.Pageof 14