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Biorxiv : the Preprint Server for Biology|June 4, 2025
Efficient evidence-based genome annotation with EviAnnAleksey V Zimin, Daniela Puiu, Mihaela Pertea, et al.
Biorxiv : the Preprint Server for Biology|October 3, 2025
Comprehensive Transcriptome Annotation of Thousands of HIV-1 GenomesAles Varabyou, Mykhaylo Artamonov, Sophia Cheng, et al.
Genome Biology|December 18, 2019
Transcriptome assembly from long-read RNA-seq alignments with StringTie2Sam Kovaka, Aleksey V Zimin, Geo M Pertea, et al.
Genetics|December 13, 2021
A reference-quality, fully annotated genome from a Puerto Rican individualAleksey V Zimin, Alaina Shumate, Ida Shinder, et al.
Nature Biotechnology|February 19, 2015
StringTie enables improved reconstruction of a transcriptome from RNA-seq readsMihaela Pertea, Geo M Pertea, Corina M Antonescu, et al.
Genome Research|December 27, 2024
Combining DNA and protein alignments to improve genome annotation with LiftOnKuan-Hao Chao, Jakob M Heinz, Celine Hoh, et al.
Biorxiv : the Preprint Server for Biology|May 27, 2024
Combining DNA and protein alignments to improve genome annotation with LiftOnKuan-Hao Chao, Jakob M Heinz, Celine Hoh, et al.
Genes|August 24, 2012
The human transcriptome: an unfinished storyMihaela Pertea
Elife|December 15, 2022
Structure-guided isoform identification for the human transcriptomeMarkus J Sommer, Sooyoung Cha, Ales Varabyou, et al.
Biorxiv : the Preprint Server for Biology|August 14, 2023
Major data analysis errors invalidate cancer microbiome findingsAbraham Gihawi, Yuchen Ge, Jennifer Lu, et al.
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