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Systematic Biology|October 20, 2023
Gene Transfer-Based Phylogenetics: Analytical Expressions and Additivity via Birth-Death TheoryGuy Katriel, Udi Mahanaymi, Shelly Brezner, et al.
Iscience|May 22, 2023
Reconstruction of a polyclonal ADCC antibody repertoire from an HIV-1 non-transmitting motherZak A Yaffe, Shilei Ding, Kevin Sung, et al.
Elife|April 7, 2026
Separating selection from mutation in antibody language modelsFrederick A Matsen, Will Dumm, Kevin Sung, et al.
Nucleic Acids Research|October 1, 2019
OGRDB: a reference database of inferred immune receptor genesWilliam Lees, Christian E Busse, Martin Corcoran, et al.
Arxiv|September 10, 2024
On the importance of assessing topological convergence in Bayesian phylogenetic inferenceMarius Brusselmans, Luiz Max Carvalho, Samuel L Hong, et al.
Biorxiv : the Preprint Server for Biology|July 16, 2025
Nucleotide context models outperform protein language models for predicting antibody affinity maturationMackenzie M Johnson, Kevin Sung, Hugh K Haddox, et al.
Plos One|December 5, 2013
More than meets the eye: associations of vaginal bacteria with gram stain morphotypes using molecular phylogenetic analysisSujatha Srinivasan, Martin T Morgan, Congzhou Liu, et al.
Virus Evolution|November 13, 2024
On the importance of assessing topological convergence in Bayesian phylogenetic inferenceMarius Brusselmans, Luiz Max Carvalho, Samuel L Hong, et al.
Plos Computational Biology|December 1, 2025
Nucleotide context models outperform protein language models for predicting antibody affinity maturationMackenzie M Johnson, Kevin Sung, Hugh K Haddox, et al.
Arxiv|November 28, 2024
Finding high posterior density phylogenies by systematically extending a directed acyclic graphChris Jennings-Shaffer, David H Rich, Matthew Macaulay, et al.
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