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IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 4, 2018
Models for Similarity Distributions of Syntenic Homologs and Applications to PhylogenomicsDavid Sankoff, Chunfang Zheng, Yue Zhang, et al.BMC Bioinformatics|June 8, 2010
Scaffold filling, contig fusion and comparative gene order inferenceAdriana Muñoz, Chunfang Zheng, Qian Zhu, et al.Scientific Reports|April 13, 2023
From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypesQiaoji Xu, Lingling Jin, Chunfang Zheng, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 7, 2009
Towards improved reconstruction of ancestral gene order in angiosperm phylogenyDavid Sankoff, Chunfang Zheng, P Kerr Wall, et al.Computational Systems Bioinformatics. Computational Systems Bioinformatics Conference|August 1, 2009
The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploidChunfang Zheng, P Kerr Wall, Jim Leebens-Mack, et al.Journal of Bioinformatics and Computational Biology|November 22, 2021
The monoploid chromosome complement of reconstructed ancestral genomes in a phylogenyQiaoji Xu, Xiaomeng Zhang, Yue Zhang, et al.BMC Molecular Biology|November 20, 2008
The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammalsRebecca S LaRue, Stefán R Jónsson, Kevin A T Silverstein, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 16, 2021
Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-OccurrencesQiaoji Xu, Lingling Jin, Yue Zhang, et al.Journal of Bioinformatics and Computational Biology|June 10, 2009
Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genomeChunfang Zheng, P Kerr Wall, James Leebens-Mack, et al.BMC Bioinformatics|February 26, 2014
The dynamics of functional classes of plant genes in rediploidized ancient polyploidsEric C H Chen, Carlos Buen Abad Najar, Chunfang Zheng, et al.Pageof 14