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Genome Biology|July 27, 2014
Corset: enabling differential gene expression analysis for de novo assembled transcriptomesNadia M Davidson, Alicia OshlackGigascience|May 4, 2018
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysisNadia M Davidson, Alicia OshlackF1000Research|June 4, 2019
Using equivalence class counts for fast and accurate testing of differential transcript usageMarek Cmero, Nadia M Davidson, Alicia OshlackGenome Medicine|May 29, 2015
JAFFA: High sensitivity transcriptome-focused fusion gene detectionNadia M Davidson, Ian J Majewski, Alicia OshlackGenome Biology|August 6, 2017
SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomesNadia M Davidson, Anthony D K Hawkins, Alicia OshlackGenome Biology|October 23, 2021
MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq dataMarek Cmero, Breon Schmidt, Ian J Majewski, et al.BMC Genomics|September 18, 2015
Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seqKatie L Ayers, Luke S Lambeth, Nadia M Davidson, et al.Evodevo|December 30, 2016
Limb patterning genes and heterochronic development of the emu wing budCraig A Smith, Peter G Farlie, Nadia M Davidson, et al.Genome Biology|January 7, 2022
JAFFAL: detecting fusion genes with long-read transcriptome sequencingNadia M Davidson, Ying Chen, Teresa Sadras, et al.Gigascience|July 9, 2018
Clinker: visualizing fusion genes detected in RNA-seq dataBreon M Schmidt, Nadia M Davidson, Anthony D K Hawkins, et al.Pageof 12