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Systematic Biology|June 6, 2013
Parsimonious inference of hybridization in the presence of incomplete lineage sortingYun Yu, R Matthew Barnett, Luay NakhlehPlos Computational Biology|June 8, 2022
Annotation-free delineation of prokaryotic homology groupsYongze Yin, Huw A Ogilvie, Luay NakhlehPlos Genetics|April 27, 2012
The probability of a gene tree topology within a phylogenetic network with applications to hybridization detectionYun Yu, James H Degnan, Luay NakhlehGenome Research|August 24, 2021
Variational inference using approximate likelihood under the coalescent with recombinationXinhao Liu, Huw A Ogilvie, Luay NakhlehGenome Biology and Evolution|May 27, 2023
"Correcting" Gene Trees to be More Like Species Trees Frequently Increases Topological ErrorZhi Yan, Huw A Ogilvie, Luay NakhlehSystematic Biology|March 8, 2018
Inferring Phylogenetic Networks Using PhyloNetDingqiao Wen, Yun Yu, Jiafan Zhu, et al.Bioinformatics (Oxford, England)|January 24, 2007
Efficient parsimony-based methods for phylogenetic network reconstructionGuohua Jin, Luay Nakhleh, Sagi Snir, et al.Molecular Biology and Evolution|October 28, 2006
Inferring phylogenetic networks by the maximum parsimony criterion: a case studyGuohua Jin, Luay Nakhleh, Sagi Snir, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 1, 2009
Parsimony score of phylogenetic networks: hardness results and a linear-time heuristicGuohua Jin, Luay Nakhleh, Sagi Snir, et al.Bioinformatics (Oxford, England)|August 25, 2006
Maximum likelihood of phylogenetic networksGuohua Jin, Luay Nakhleh, Sagi Snir, et al.Pageof 9