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Nature Methods|November 14, 2024
Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencingMartin Proks, Nazmus Salehin, Joshua M BrickmanMethods in Molecular Biology (Clifton, N.J.)|July 21, 2025
A Deep Learning Approach to Assessing Cell Identity in Stem Cell-Based Embryo ModelsNazmus Salehin, Martin Proks, Joshua M BrickmanStem Cell Reports|January 12, 2024
Transcription factor co-expression mediates lineage priming for embryonic and extra-embryonic differentiationAlba Redó-Riveiro, Jasmina Al-Mousawi, Madeleine Linneberg-Agerholm, et al.Bioinformatics Advances|May 29, 2025
nf-core/marsseq: systematic preprocessing pipeline for MARS-seq experimentsMartin Proks, Jose Alejandro Romero Herrera, Jakub Sedzinski, et al.Elife|August 15, 2022
Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm primingMarta Perera, Silas Boye Nissen, Martin Proks, et al.Journal of Bioinformatics and Computational Biology|April 28, 2020
Prenet: Predictive network from ATAC-SEQ dataNazmus Salehin, Patrick P L Tam, Pierre OsteilNature Communications|July 28, 2025
Suppression of ERK signalling promotes pluripotent epiblast in the human blastocystClaire S Simon, Afshan McCarthy, Laura Woods, et al.Methods in Molecular Biology (Clifton, N.J.)|April 29, 2022
Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-SeqNazmus Salehin, Nicole Santucci, Pierre Osteil, et al.Cell|June 25, 2024
The primitive endoderm supports lineage plasticity to enable regulative developmentMadeleine Linneberg-Agerholm, Annika Charlotte Sell, Alba Redó-Riveiro, et al.Biochemical Society Transactions|November 18, 2022
Mammalian gastrulation: signalling activity and transcriptional regulation of cell lineage differentiation and germ layer formationNazmus Salehin, Hilary Knowles, V Pragathi Masamsetti, et al.Pageof 8