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Biorxiv : the Preprint Server for Biology
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March 17, 2025
Bayesian nonparametric analysis of residence times for protein-lipid interactions in Molecular Dynamics simulations
Ricky Sexton, Mohamadreza Fazel, Maxwell Schweiger, et al.
Plos Computational Biology
|
June 18, 2019
Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Sean L Seyler, Avishek Kumar, M F Thorpe, et al.
Journal of Computer-Aided Molecular Design
|
August 8, 2018
SAMPL6: calculation of macroscopic pK<sub>a</sub> values from ab initio quantum mechanical free energies
Edithe Selwa, Ian M Kenney, Oliver Beckstein, et al.
Journal of Chemical Theory and Computation
|
April 2, 2025
Bayesian Nonparametric Analysis of Residence Times for Protein-Lipid Interactions in Molecular Dynamics Simulations
Ricky Sexton, Mohamadreza Fazel, Maxwell Schweiger, et al.
Journal of Chemical Theory and Computation
|
December 20, 2013
Energetics of Multi-Ion Conduction Pathways in Potassium Ion Channels
Philip W Fowler, Enrique Abad, Oliver Beckstein, et al.
Journal of Computational Chemistry
|
December 7, 2010
Computing ensembles of transitions from stable states: Dynamic importance sampling
Juan R Perilla, Oliver Beckstein, Elizabeth J Denning, et al.
Nature Communications
|
October 7, 2016
Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA
Yandong Huang, Wei Chen, David L Dotson, et al.
The Journal of Membrane Biology
|
August 12, 2010
Lipidbook: a public repository for force-field parameters used in membrane simulations
Jan Domański, Phillip J Stansfeld, Mark S P Sansom, et al.
Journal of Computational Chemistry
|
April 19, 2011
MDAnalysis: a toolkit for the analysis of molecular dynamics simulations
Naveen Michaud-Agrawal, Elizabeth J Denning, Thomas B Woolf, et al.
Journal of Molecular Biology
|
September 16, 2009
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions
Oliver Beckstein, Elizabeth J Denning, Juan R Perilla, et al.
Page
of 7
Search research articles
Search
Showing results (21-30 of 64) with videos related to
Sort By:
Page
of 7
Biorxiv : the Preprint Server for Biology
|
March 17, 2025
Bayesian nonparametric analysis of residence times for protein-lipid interactions in Molecular Dynamics simulations
Ricky Sexton, Mohamadreza Fazel, Maxwell Schweiger, et al.
Plos Computational Biology
|
June 18, 2019
Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
Sean L Seyler, Avishek Kumar, M F Thorpe, et al.
Journal of Computer-Aided Molecular Design
|
August 8, 2018
SAMPL6: calculation of macroscopic pK<sub>a</sub> values from ab initio quantum mechanical free energies
Edithe Selwa, Ian M Kenney, Oliver Beckstein, et al.
Journal of Chemical Theory and Computation
|
April 2, 2025
Bayesian Nonparametric Analysis of Residence Times for Protein-Lipid Interactions in Molecular Dynamics Simulations
Ricky Sexton, Mohamadreza Fazel, Maxwell Schweiger, et al.
Journal of Chemical Theory and Computation
|
December 20, 2013
Energetics of Multi-Ion Conduction Pathways in Potassium Ion Channels
Philip W Fowler, Enrique Abad, Oliver Beckstein, et al.
Journal of Computational Chemistry
|
December 7, 2010
Computing ensembles of transitions from stable states: Dynamic importance sampling
Juan R Perilla, Oliver Beckstein, Elizabeth J Denning, et al.
Nature Communications
|
October 7, 2016
Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA
Yandong Huang, Wei Chen, David L Dotson, et al.
The Journal of Membrane Biology
|
August 12, 2010
Lipidbook: a public repository for force-field parameters used in membrane simulations
Jan Domański, Phillip J Stansfeld, Mark S P Sansom, et al.
Journal of Computational Chemistry
|
April 19, 2011
MDAnalysis: a toolkit for the analysis of molecular dynamics simulations
Naveen Michaud-Agrawal, Elizabeth J Denning, Thomas B Woolf, et al.
Journal of Molecular Biology
|
September 16, 2009
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions
Oliver Beckstein, Elizabeth J Denning, Juan R Perilla, et al.
Page
of 7