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BMC Bioinformatics|June 14, 2016
Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysisPanagiotis Chouvardas, George Kollias, Christoforos Nikolaou
Scientific Reports|April 3, 2023
Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heartMarius Alexandru Botos, Prateek Arora, Panagiotis Chouvardas, et al.
Scientific Reports|May 13, 2024
Cell type specific long non-coding RNA targets identified by integrative analysis of single-cell and bulk colorectal cancer transcriptomesAnte Mihaljevic, Philip D Rubin, Panagiotis Chouvardas, et al.
NPJ Precision Oncology|April 24, 2024
Overcoming limitations in current measures of drug response may enable AI-driven precision oncologyKatja Ovchinnikova, Jannis Born, Panagiotis Chouvardas, et al.
Communications Biology|March 4, 2024
ScLinear predicts protein abundance at single-cell resolutionDaniel Hanhart, Federico Gossi, Maria Anna Rapsomaniki, et al.
Nucleic Acids Research|June 1, 2019
LnCompare: gene set feature analysis for human long non-coding RNAsJoana Carlevaro-Fita, Leibo Liu, Yuan Zhou, et al.
Briefings in Bioinformatics|April 30, 2023
Matching single cells across modalities with contrastive learning and optimal transportFederico Gossi, Pushpak Pati, Panagiotis Chouvardas, et al.
Plos Computational Biology|May 10, 2019
An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritisNiki Karagianni, Ksanthi Kranidioti, Nikolaos Fikas, et al.
Annals of the Rheumatic Diseases|February 25, 2018
Comorbid TNF-mediated heart valve disease and chronic polyarthritis share common mesenchymal cell-mediated aetiopathogenesisLydia Ntari, Maria Sakkou, Panagiotis Chouvardas, et al.
Gene|May 14, 2023
Molecular profiling of osteoprogenitor cells reveals FOS as a master regulator of bone non-unionFederico La Manna, Daniel Hanhart, Peter Kloen, et al.
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