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Genome Research|October 6, 2025
Integrative chromatin state annotation of 234 human ENCODE4 cell types using SegwayMarjan Farahbod, Aboud Diab, Paul Sud, et al.Nucleic Acids Research|November 13, 2019
New developments on the Encyclopedia of DNA Elements (ENCODE) data portalYunhai Luo, Benjamin C Hitz, Idan Gabdank, et al.Current Protocols in Bioinformatics|November 22, 2019
The ENCODE Portal as an Epigenomics ResourceJennifer Jou, Idan Gabdank, Yunhai Luo, et al.Nature Communications|October 31, 2025
Data navigation on the ENCODE portalMeenakshi S Kagda, Bonita Lam, Casey Litton, et al.Biorxiv : the Preprint Server for Biology|June 9, 2023
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversityFairlie Reese, Brian Williams, Gabriela Balderrama-Gutierrez, et al.Biorxiv : the Preprint Server for Biology|April 17, 2023
The ENCODE Uniform Analysis PipelinesBenjamin C Hitz, Lee Jin-Wook, Otto Jolanki, et al.Research Square|July 28, 2023
The ENCODE Uniform Analysis PipelinesBenjamin C Hitz, Jin-Wook Lee, Otto Jolanki, et al.Pageof 1