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Nucleic Acids Research|September 29, 2009
Recode-2: new design, new search tools, and many more genesMichaël Bekaert, Andrew E Firth, Yan Zhang, et al.
Bioinformatics (Oxford, England)|April 23, 2013
rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experimentsPatrick B F O'Connor, Gene-Wei Li, Jonathan S Weissman, et al.
Frontiers in Genetics|May 30, 2019
Simplicity DiffExpress: A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and AnalysisCintia C Palu, Marcelo Ribeiro-Alves, Yanxin Wu, et al.
Gene|February 8, 2018
Translation control of mRNAs encoding mammalian translation initiation factorsDmitri E Andreev, Sergey E Dmitriev, Gary Loughran, et al.
Genome Biology|May 9, 2022
Non-AUG translation initiation in mammalsDmitry E Andreev, Gary Loughran, Alla D Fedorova, et al.
The EMBO Journal|November 1, 2003
Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coliOlga L Gurvich, Pavel V Baranov, Jiadong Zhou, et al.
Molecular Biology and Evolution|June 16, 2011
A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignmentVirag Sharma, Andrew E Firth, Ivan Antonov, et al.
Microbiology Spectrum|March 7, 2024
Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infectionPatrick B F O'Connor, Jennifer Mahony, Eoghan Casey, et al.
Nucleic Acids Research|December 8, 2016
Insights into the mechanisms of eukaryotic translation gained with ribosome profilingDmitry E Andreev, Patrick B F O'Connor, Gary Loughran, et al.
Elife|June 23, 2018
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress responseDmitry E Andreev, Maxim Arnold, Stephen J Kiniry, et al.
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