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Iscience|April 20, 2026
Suggested experimental design and computational modeling to infer single-cell lipid dynamics from a single destructive measurementPaul Jonas Jost, Daniel Weindl, Klaus Wunderling, et al.Bioinformatics (Oxford, England)|March 1, 2019
Benchmarking optimization methods for parameter estimation in large kinetic modelsAlejandro F Villaverde, Fabian Fröhlich, Daniel Weindl, et al.Trends in Biotechnology|March 14, 2026
Next-generation discovery: empowering organoid research with machine learning, artificial intelligence, and mathematical modelingSneha Pushpa Ramesan, Jasmitha Boovadira Poonacha, Dilan Pathirana, et al.Nucleic Acids Research|February 26, 2024
Processivity and specificity of histone acetylation by the male-specific lethal complexAnna E Kiss, Anuroop V Venkatasubramani, Dilan Pathirana, et al.Plos Computational Biology|January 26, 2021
PEtab-Interoperable specification of parameter estimation problems in systems biologyLeonard Schmiester, Yannik Schälte, Frank T Bergmann, et al.Computer Methods in Biomechanics and Biomedical Engineering|November 10, 2017
The effects of tapering and artery wall stiffness on treatments for Coarctation of the AortaDilan Pathirana, Barbara Johnston, Peter JohnstonComputer Methods in Biomechanics and Biomedical Engineering|February 5, 2019
The effect of including increased arterial stiffness in the upper body when modelling Coarctation of the AortaDilan Pathirana, Barbara Johnston, Peter JohnstonBioinformatics (Oxford, England)|October 26, 2017
PESTO: Parameter EStimation TOolboxPaul Stapor, Daniel Weindl, Benjamin Ballnus, et al.Bioinformatics (Oxford, England)|May 7, 2016
Analysis of CFSE time-series data using division-, age- and label-structured population modelsSabrina Hross, Jan HasenauerPlos One|May 22, 2023
Informative and adaptive distances and summary statistics in sequential approximate Bayesian computationYannik Schälte, Jan HasenauerPageof 17