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NPJ Systems Biology and Applications|March 2, 2025
Loss formulations for assumption-free neural inference of SDE coefficient functionsMarc Vaisband, Valentin von Bornhaupt, Nina Schmid, et al.
Scientific Reports|January 30, 2021
Benchmarking of numerical integration methods for ODE models of biological systemsPhilipp Städter, Yannik Schälte, Leonard Schmiester, et al.
Plos One|January 26, 2016
CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical KineticsAtefeh Kazeroonian, Fabian Fröhlich, Andreas Raue, et al.
Briefings in Bioinformatics|April 25, 2018
Community-driven roadmap for integrated disease mapsMarek Ostaszewski, Stephan Gebel, Inna Kuperstein, et al.
EURASIP Journal on Bioinformatics & Systems Biology|June 2, 2012
A visual analytics approach for models of heterogeneous cell populationsJan Hasenauer, Julian Heinrich, Malgorzata Doszczak, et al.
Mathematical Biosciences|September 21, 2025
A dynamic model for Waddington's landscape accounting for cell-to-cell communicationSimon Merkt, Lara Fuhrmann, Erika Dudkin, et al.
BMC Bioinformatics|April 30, 2011
Identification of models of heterogeneous cell populations from population snapshot dataJan Hasenauer, Steffen Waldherr, Malgorzata Doszczak, et al.
Bioinformatics (Oxford, England)|August 30, 2023
Accessibility of covariance information creates vulnerability in Federated Learning frameworksManuel Huth, Jonas Arruda, Roy Gusinow, et al.
Plos Computational Biology|June 2, 2026
Data-driven model reveals increased stability of CAG-expanded huntingtin RNA due to MID1 bindingYuhong Liu, Annika Reisbitzer, Domagoj Dorešić, et al.
BMC Systems Biology|June 26, 2017
Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systemsBenjamin Ballnus, Sabine Hug, Kathrin Hatz, et al.
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