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Microbiome|April 13, 2016
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyleAnastassia Gorvitovskaia, Susan P Holmes, Susan M HuseCancer Biotherapy & Radiopharmaceuticals|July 17, 2015
Hematological Effects, Serum, and Pulmonary Cytokine Profiles in a Melanoma Mouse Model Treated with GK1Armando Pérez-Torres, Jesus Vera-Aguilera, Jorge H Sahaza, et al.The ISME Journal|July 22, 2017
Exact sequence variants should replace operational taxonomic units in marker-gene data analysisBenjamin J Callahan, Paul J McMurdie, Susan P HolmesBMC Bioinformatics|November 2, 2012
Denoising PCR-amplified metagenome dataMichael J Rosen, Benjamin J Callahan, Daniel S Fisher, et al.The Journal of Antimicrobial Chemotherapy|May 14, 2010
Constrained patterns of covariation and clustering of HIV-1 non-nucleoside reverse transcriptase inhibitor resistance mutationsElizabeth C Reuman, Soo-Yon Rhee, Susan P Holmes, et al.Plos Computational Biology|May 16, 2007
HIV-1 subtype B protease and reverse transcriptase amino acid covariationSoo-Yon Rhee, Tommy F Liu, Susan P Holmes, et al.Journal of Immunology (Baltimore, Md. : 1950)|August 26, 2018
Differential Induction of IFN-α and Modulation of CD112 and CD54 Expression Govern the Magnitude of NK Cell IFN-γ Response to Influenza A VirusesLisa M Kronstad, Christof Seiler, Rosemary Vergara, et al.F1000Research|November 17, 2016
Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analysesBen J Callahan, Kris Sankaran, Julia A Fukuyama, et al.AIDS Research and Human Retroviruses|December 14, 2022
Highly Ambiguous HIV-1 Pol Positions Encoding Multiple Amino Acids Usually Result from Antiviral or Immune Selection PressureKaiming Tao, Soo-Yon Rhee, Philip L Tzou, et al.Microbiome|December 19, 2018
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics dataNicole M Davis, Diana M Proctor, Susan P Holmes, et al.Pageof 7