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Arxiv|July 3, 2026
Smoothly Time-Varying Continuous Time Markov Chains in PhylogeneticsPratyusa Datta, Philippe Lemey, Marc A SuchardArxiv|November 24, 2025
Inhomogeneous continuous-time Markov chains to infer flexible time-varying evolutionary ratesPratyusa Datta, Philippe Lemey, Marc A SuchardVirus Evolution|October 14, 2017
Accurate quantification of within- and between-host HBV evolutionary rates requires explicit transmission chain modellingBram Vrancken, Marc A Suchard, Philippe LemeySystematic Biology|November 4, 2015
Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic UncertaintyGuy Baele, Philippe Lemey, Marc A SuchardTrends in Ecology & Evolution|September 25, 2010
Three roads diverged? Routes to phylogeographic inferenceErik W Bloomquist, Philippe Lemey, Marc A SuchardBioinformatics (Oxford, England)|February 16, 2017
Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEASTGuy Baele, Philippe Lemey, Andrew Rambaut, et al.Systematic Biology|February 8, 2017
Emerging Concepts of Data Integration in Pathogen PhylodynamicsGuy Baele, Marc A Suchard, Andrew Rambaut, et al.Bioinformatics (Oxford, England)|September 14, 2011
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamicsFilip Bielejec, Andrew Rambaut, Marc A Suchard, et al.Microbial Genomics|March 29, 2017
Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variationGuy Baele, Marc A Suchard, Filip Bielejec, et al.Wellcome Open Research|September 14, 2020
Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics frameworkGuy Baele, Mandev S Gill, Philippe Lemey, et al.Pageof 63