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Nature Computational Science|January 30, 2023
Accurate assembly of multi-end RNA-seq data with Scallop2Qimin Zhang, Qian Shi, Mingfu ShaoBioinformatics (Oxford, England)|June 28, 2024
Accurate assembly of multiple RNA-seq samples with AletschQian Shi, Qimin Zhang, Mingfu ShaoBiorxiv : the Preprint Server for Biology|November 22, 2024
Transcriptome Assembly at Single-Cell Resolution with BeaverQian Shi, Qimin Zhang, Mingfu ShaoBioinformatics (Oxford, England)|July 15, 2025
Transcriptome assembly at single-cell resolution with BeaverQian Shi, Qimin Zhang, Mingfu ShaoBiorxiv : the Preprint Server for Biology|May 3, 2023
Transcript Assembly and Annotations: Bias and AdjustmentQimin Zhang, Mingfu ShaoPlos Computational Biology|December 21, 2023
Transcript assembly and annotations: Bias and adjustmentQimin Zhang, Mingfu ShaoBioinformatics (Oxford, England)|June 30, 2023
Seeding with minimized subsequenceXiang Li, Qian Shi, Ke Chen, et al.Biorxiv : the Preprint Server for Biology|February 19, 2024
Accurate Assembly of Circular RNAs with TERRACETasfia Zahin, Qian Shi, Xiaofei Carl Zang, et al.Genome Research|July 26, 2024
Accurate assembly of circular RNAs with TERRACETasfia Zahin, Qian Shi, Xiaofei Carl Zang, et al.Genome Research|May 4, 2026
Hash functions in nucleotide sequence analysisKe Chen, Xiang Li, Qian Shi, et al.Pageof 87