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Nucleic Acids Research|September 3, 2025
Deciphering enzymatic potential in metagenomic reads through DNA language modelsR Prabakaran, Yana BrombergBioinformatics (Oxford, England)|January 24, 2025
Functional profiling of the sequence stockpile: a protein pair-based assessment of in silico prediction toolsR Prabakaran, Yana BrombergNature Methods|April 1, 2026
Quantifying uncertainty in protein representations across models and tasksR Prabakaran, Yana BrombergCold Spring Harbor Perspectives in Biology|April 15, 2024
Variant Effect Prediction in the Age of Machine LearningYana Bromberg, R Prabakaran, Anowarul Kabir, et al.Frontiers in Genetics|October 26, 2019
Predicting Functional Effects of Synonymous Variants: A Systematic Review and PerspectivesZishuo Zeng, Yana BrombergNucleic Acids Research|May 29, 2007
SNAP: predict effect of non-synonymous polymorphisms on functionYana Bromberg, Burkhard RostBMC Bioinformatics|September 18, 2009
Correlating protein function and stability through the analysis of single amino acid substitutionsYana Bromberg, Burkhard RostBioinformatics (Oxford, England)|August 12, 2008
Comprehensive in silico mutagenesis highlights functionally important residues in proteinsYana Bromberg, Burkhard RostPageof 11