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Molecular Biology and Evolution|June 19, 2019
Identifying Clusters of High Confidence Homologies in Multiple Sequence AlignmentsRaja Hashim Ali, Marcin Bogusz, Simon WhelanSystematic Biology|September 17, 2016
Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and BenchmarkingMarcin Bogusz, Simon WhelanMolecular Phylogenetics and Evolution|August 24, 2014
Tracing the evolution of FERM domain of KindlinsRaja Hashim Ali, Ammad Aslam KhanJournal of Molecular Evolution|October 1, 2020
Evolutionary History of Alzheimer Disease-Causing Protein Family Presenilins with Pathological ImplicationsAmmad Aslam Khan, Raja Hashim Ali, Bushra MirzaBMC Bioinformatics|February 26, 2014
Quantitative synteny scoring improves homology inference and partitioning of gene familiesRaja Hashim Ali, Sayyed Muhammad, Mehmood Khan, et al.Frontiers in Artificial Intelligence|January 23, 2026
Predicting and identifying correlates of inequalities in breast cancer screening uptake using national level data from IndiaAleena Tanveer, Raja Hashim Ali, Jitendra Majhi, et al.Plos One|November 17, 2025
Classifying complex multimorbidity using latent class analysis and machine learning to generate insights into clustering of mental and cardiometabolic conditionsMoumita Mukherjee, Samhita Mukherjee, Hruthik Reddy Thokala, et al.Oncotarget|August 5, 2016
S18 family of mitochondrial ribosomal proteins: evolutionary history and Gly132 polymorphism in colon carcinomaMuhammad Mushtaq, Raja Hashim Ali, Vladimir Kashuba, et al.Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|October 15, 2008
The genetic code can cause systematic bias in simple phylogenetic modelsSimon WhelanPageof 5