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Biorxiv : the Preprint Server for Biology|March 26, 2024
PNAbind: Structure-based prediction of protein-nucleic acid binding using graph neural networksJared M Sagendorf, Raktim Mitra, Jiawei Huang, et al.
Biophysical Reviews|September 30, 2024
Structure-based prediction of protein-nucleic acid binding using graph neural networksJared M Sagendorf, Raktim Mitra, Jiawei Huang, et al.
Nucleic Acids Research|November 4, 2024
DNAproDB: an updated database for the automated and interactive analysis of protein-DNA complexesRaktim Mitra, Ari S Cohen, Jared M Sagendorf, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 26, 2014
The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemiaAdam L MacLean, Sarah Filippi, Michael P H Stumpf
Nucleic Acids Research|March 30, 2019
Cell lineage and communication network inference via optimization for single-cell transcriptomicsShuxiong Wang, Matthew Karikomi, Adam L MacLean, et al.
Cancer Immunology Research|February 27, 2023
Myeloid-Derived Suppressor-Cell Dynamics Control Outcomes in the Metastatic NicheJesse Kreger, Evanthia T Roussos Torres, Adam L MacLean
Bioinformatics (Oxford, England)|February 8, 2018
scEpath: energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic dataSuoqin Jin, Adam L MacLean, Tao Peng, et al.
Biorxiv : the Preprint Server for Biology|January 31, 2024
DeepPBS: Geometric deep learning for interpretable prediction of protein-DNA binding specificityRaktim Mitra, Jinsen Li, Jared M Sagendorf, et al.
Nature Communications|November 26, 2024
Developmental hematopoietic stem cell variation explains clonal hematopoiesis later in lifeJesse Kreger, Jazlyn A Mooney, Darryl Shibata, et al.
Biorxiv : the Preprint Server for Biology|March 18, 2024
Developmental hematopoietic stem cell variation explains clonal hematopoiesis later in lifeJesse Kreger, Jazlyn A Mooney, Darryl Shibata, et al.
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