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Genome Informatics. International Conference on Genome Informatics|February 16, 2005
ELISA: a unified, multidimensional view of the protein domain universeBoris E Shakhnovich, John Max Harvey, Charles DelisiJournal of the American Chemical Society|July 9, 2004
Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potentialZhijie Liu, Brian N Dominy, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|May 20, 2004
Simulation, experiment, and evolution: understanding nucleation in protein S6 foldingIsaac A Hubner, Mikael Oliveberg, Eugene I ShakhnovichMolecular Microbiology|November 8, 2007
Molecular mechanisms of virstatin resistance by non-O1/non-O139 strains of Vibrio choleraeElizabeth A Shakhnovich, Derek Sturtevant, John J MekalanosProceedings of the National Academy of Sciences of the United States of America|October 5, 2007
Protein stability imposes limits on organism complexity and speed of molecular evolutionKonstantin B Zeldovich, Peiqiu Chen, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|May 8, 2023
Phosphorylation sites are evolutionary checkpoints against liquid-solid transition in protein condensatesSrivastav Ranganathan, Pouria Dasmeh, Seth Furniss, et al.Journal of Biological Physics|January 25, 2013
Energy profile of the space of model protein sequencesG Tiana, R A Broglia, E I ShakhnovichBiophysical Journal|October 9, 2014
Evolution of specificity in protein-protein interactionsOrit Peleg, Jeong-Mo Choi, Eugene I ShakhnovichCurrent Opinion in Structural Biology|November 5, 2016
Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populationsShimon Bershtein, Adrian Wr Serohijos, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 9, 2005
Imperfect DNA lesion repair in the semiconservative quasispecies model: derivation of the Hamming class equations and solution of the single-fitness peak landscapeEmmanuel Tannenbaum, James L Sherley, Eugene I ShakhnovichPageof 626