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Biorxiv : the Preprint Server for Biology|March 30, 2023
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great ApesMarta Tomaszkiewicz, Kristoffer Sahlin, Paul Medvedev, et al.Lipics : Leibniz International Proceedings in Informatics|April 29, 2025
Applying the Safe-And-Complete Framework to Practical Genome AssemblySebastian Schmidt, Santeri Toivonen, Paul Medvedev, et al.Nucleic Acids Research|May 10, 2013
Reprever: resolving low-copy duplicated sequences using template driven assemblySangwoo Kim, Paul Medvedev, Tara A Paton, et al.Algorithms in Bioinformatics : ... International Workshop, WABI ..., Proceedings. WABI (Workshop)|April 23, 2026
Estimation of substitution and indel rates via k-mer statisticsMahmudur Rahman Hera, Paul Medvedev, David Koslicki, et al.Nature Communications|May 7, 2026
A versatile multi-components mixed model for bacterial-Genome Wide association studiesArthur Frouin, Fabien Laporte, Lukas Hafner, et al.Genome Research|May 4, 2026
Hash functions in nucleotide sequence analysisKe Chen, Xiang Li, Qian Shi, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 18, 2011
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblersPaul Medvedev, Son Pham, Mark Chaisson, et al.Genome Research|September 1, 2010
Detecting copy number variation with mated short readsPaul Medvedev, Marc Fiume, Misko Dzamba, et al.Genome Biology|July 27, 2021
STRONG: metagenomics strain resolution on assembly graphsChristopher Quince, Sergey Nurk, Sebastien Raguideau, et al.Bioinformatics (Oxford, England)|June 27, 2022
The minimizer Jaccard estimator is biased and inconsistentMahdi Belbasi, Antonio Blanca, Robert S Harris, et al.Pageof 14