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Scientific Reports|March 23, 2013
Using false discovery rates to benchmark SNP-callers in next-generation sequencing projectsRhys A Farrer, Daniel A Henk, Dan MacLean, et al.Proceedings of the National Academy of Sciences of the United States of America|January 3, 2023
Two-speed genome evolution drives pathogenicity in fungal pathogens of animalsTheresa Wacker, Nicolas Helmstetter, Duncan Wilson, et al.Methods in Molecular Biology (Clifton, N.J.)|July 30, 2025
Genome Assembly, Polishing, and Analysis of the Chytrid Batrachochytrium salamandrivoransTheresa Wacker, David J Studholme, Rhys A FarrerAdvances in Genetics|November 21, 2017
Describing Genomic and Epigenomic Traits Underpinning Emerging Fungal PathogensRhys A Farrer, Matthew C FisherMethods in Molecular Biology (Clifton, N.J.)|July 30, 2025
Preassembly Read Processing and Quality Control in Fungal Genomes, Exemplified by the Chytrid Batrachochytrium salamandrivoransTheresa Wacker, David J Studholme, Rhys A FarrerFrontiers in Bioinformatics|September 2, 2025
DIAMOND2GO: rapid Gene Ontology assignment and enrichment detection for functional genomicsChristopher Golden, David J Studholme, Rhys A FarrerPlos Genetics|August 23, 2013
Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicityRhys A Farrer, Daniel A Henk, Trenton W J Garner, et al.Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|January 13, 2017
Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattiiRhys A Farrer, Kerstin Voelz, Daniel A Henk, et al.FEMS Microbiology Letters|December 17, 2008
De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence readsRhys A Farrer, Eric Kemen, Jonathan D G Jones, et al.Plos One|August 19, 2011
Genetic diversity, recombination, and divergence in animal associated Penicillium dipodomyisDaniel A Henk, Matthew C FisherPageof 38