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Bioinformatics (Oxford, England)|July 23, 2003
SATCHMO: sequence alignment and tree construction using hidden Markov modelsRobert C Edgar, Kimmen SjölanderBioinformatics (Oxford, England)|February 14, 2004
COACH: profile-profile alignment of protein families using hidden Markov modelsRobert C Edgar, Kimmen SjölanderPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 27, 2003
Simultaneous sequence alignment and tree construction using hidden Markov modelsRobert C Edgar, Kimmen SjölanderBioinformatics (Oxford, England)|February 14, 2004
A comparison of scoring functions for protein sequence profile alignmentRobert C Edgar, Kimmen SjölanderBioinformatics (Oxford, England)|January 22, 2004
Phylogenomic inference of protein molecular function: advances and challengesKimmen SjölanderBioinformatics (Oxford, England)|September 9, 2008
INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentificationSriram Sankararaman, Kimmen SjölanderCurrent Protocols in Bioinformatics|April 23, 2008
Phylogenomic inference of protein molecular functionNandini Krishnamurthy, Kimmen SjölanderNucleic Acids Research|May 16, 2009
INTREPID: a web server for prediction of functionally important residues by evolutionary analysisSriram Sankararaman, Bryan Kolaczkowski, Kimmen SjölanderBMC Evolutionary Biology|February 10, 2007
FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein functionNandini Krishnamurthy, Duncan Brown, Kimmen SjölanderThe Plant Cell|August 21, 2004
From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plantsEnrico Magnani, Kimmen Sjölander, Sarah HakePageof 8