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Briefings in Bioinformatics|September 27, 2006
Advanced computing for systems biologyKevin Burrage, Lindsay Hood, Mark A RaganInterdisciplinary Topics in Gerontology and Geriatrics|August 25, 2015
Frailty and the MicrobiomeConor J Meehan, Morgan G I Langille, Robert G BeikoEnvironmental Microbiology|December 27, 2023
Mock microbial community meta-analysis using different trimming of amplicon read lengthsDiana Haider, Michael W Hall, Julie LaRoche, et al.Ecology and Evolution|August 4, 2018
PMERGE: Computational filtering of paralogous sequences from RAD-seq dataPraveen Nadukkalam Ravindran, Paul Bentzen, Ian R Bradbury, et al.Bioinformatics (Oxford, England)|July 26, 2014
STAMP: statistical analysis of taxonomic and functional profilesDonovan H Parks, Gene W Tyson, Philip Hugenholtz, et al.Genome Biology and Evolution|May 17, 2025
ParallelEvolCCM: Quantifying Coevolutionary Patterns Among Genomic FeaturesRobert G Beiko, Chaoyue Liu, João Vitor Cavalcante, et al.RNA Biology|February 28, 2014
Molecular phylogenetics before sequences: oligonucleotide catalogs as k-mer spectraMark A Ragan, Guillaume Bernard, Cheong Xin ChanMolecular Ecology Resources|October 13, 2018
RADProc: A computationally efficient de novo locus assembler for population studies using RADseq dataPraveen Nadukkalam Ravindran, Paul Bentzen, Ian R Bradbury, et al.Plos Genetics|July 25, 2008
Dynamics of genome rearrangement in bacterial populationsAaron E Darling, István Miklós, Mark A RaganScientific Reports|July 26, 2016
Exploring lateral genetic transfer among microbial genomes using TF-IDFYingnan Cong, Yao-Ban Chan, Mark A RaganPageof 19