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Cell Genomics|March 7, 2022
Direct detection of RNA modifications and structure using single-molecule nanopore sequencingWilliam Stephenson, Roham Razaghi, Steven Busan, et al.G3 (Bethesda, Md.)|February 9, 2021
De novo genome assembly of the tobacco hornworm moth (Manduca sexta)Ariel Gershman, Tatiana G Romer, Yunfan Fan, et al.Genome Biology|December 18, 2019
Transcriptome assembly from long-read RNA-seq alignments with StringTie2Sam Kovaka, Aleksey V Zimin, Geo M Pertea, et al.Journal of Addiction Medicine|September 27, 2024
Personal Experiences With Xylazine and Behavior Change: A Qualitative Content Analysis of Reddit PostsOmeid Heidari, Olivia K Sugarman, Abigail K Winiker, et al.Nature Methods|March 29, 2025
Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignmentSam Kovaka, Paul W Hook, Katharine M Jenike, et al.Biorxiv : the Preprint Server for Biology|March 18, 2024
Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignmentSam Kovaka, Paul W Hook, Katharine M Jenike, et al.Nature Methods|November 24, 2020
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencingIsac Lee, Roham Razaghi, Timothy Gilpatrick, et al.Substance Use & Addiction Journal|November 6, 2025
Self-Advocacy and Perceptions of the Role of Government in the Xylazine Era of the Overdose Crisis: A Qualitative Analysis of Reddit ContentOlivia K Sugarman, Sachini Bandara, Abigail Winiker, et al.Nature Communications|November 26, 2021
Plasma virome and the risk of blood-borne infection in persons with substance use disorderAbraham J Kandathil, Andrea L Cox, Kimberly Page, et al.Science Advances|June 22, 2022
Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomasDeanna M Tiek, Beril Erdogdu, Roham Razaghi, et al.Pageof 2