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Current Opinion in Plant Biology|November 23, 2024
The gene function prediction challenge: Large language models and knowledge graphs to the rescueRohan Shawn Sunil, Shan Chun Lim, Manoj Itharajula, et al.The Plant Cell|July 23, 2025
PlantConnectome: A knowledge graph database encompassing >71,000 plant articlesShan Chun Lim, Manoj Itharajula, Mads Harder Møller, et al.Computational and Structural Biotechnology Journal|October 17, 2024
Confronting the data deluge: How artificial intelligence can be used in the study of plant stressEugene Koh, Rohan Shawn Sunil, Hilbert Yuen In Lam, et al.The New Phytologist|September 15, 2024
Current challenges for plant biology research in the Global SouthGabriela Auge, Rohan Shawn Sunil, Robert A Ingle, et al.Nature Communications|April 30, 2026
Constructing gene co-functional and co-regulatory networks from public transcriptomes using condition-specific ensemble co-expressionPeng Ken Lim, Ruoxi Wang, Shan Chun Lim, et al.Current Opinion in Plant Biology|March 23, 2020
Computational approaches to unravel the pathways and evolution of specialized metabolismMarek MutwilMethods in Molecular Biology (Clifton, N.J.)|December 18, 2016
PlaNet: Comparative Co-Expression Network Analyses for PlantsSebastian Proost, Marek MutwilCurrent Opinion in Plant Biology|March 19, 2016
Tools of the trade: studying molecular networks in plantsSebastian Proost, Marek MutwilNucleic Acids Research|May 3, 2018
CoNekT: an open-source framework for comparative genomic and transcriptomic network analysesSebastian Proost, Marek MutwilBioinformatics (Oxford, England)|March 11, 2021
LSTrAP-Kingdom: an automated pipeline to generate annotated gene expression atlases for kingdoms of lifeWilliam Goh, Marek MutwilPageof 10