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Protein Science : a Publication of the Protein Society|December 11, 2023
Evaluation of AlphaFold antibody-antigen modeling with implications for improving predictive accuracyRui Yin, Brian G Pierce
Biorxiv : the Preprint Server for Biology|July 18, 2023
Evaluation of AlphaFold Antibody-Antigen Modeling with Implications for Improving Predictive AccuracyRui Yin, Brian G Pierce
Frontiers in Immunology|July 25, 2022
Structural Features of Antibody-Peptide RecognitionJessica H Lee, Rui Yin, Gilad Ofek, et al.
Protein Science : a Publication of the Protein Society|July 28, 2022
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinantsRui Yin, Brandon Y Feng, Amitabh Varshney, et al.
Proteins|January 20, 2025
AlphaFold and Docking Approaches for Antibody-Antigen and Other Targets: Insights From CAPRI Rounds 47-55Ragul Gowthaman, Minjae Park, Rui Yin, et al.
Nucleic Acids Research|May 4, 2023
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learningRui Yin, Helder V Ribeiro-Filho, Valerie Lin, et al.
Nucleic Acids Research|September 5, 2020
CoV3D: a database of high resolution coronavirus protein structuresRagul Gowthaman, Johnathan D Guest, Rui Yin, et al.
Plos Computational Biology|September 7, 2021
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variantsRui Yin, Johnathan D Guest, Ghazaleh Taherzadeh, et al.
Biorxiv : the Preprint Server for Biology|June 25, 2020
CoV3D: A database and resource for high resolution coronavirus protein structuresRagul Gowthaman, Johnathan D Guest, Rui Yin, et al.
Nucleic Acids Research|May 24, 2018
TCRmodel: high resolution modeling of T cell receptors from sequenceRagul Gowthaman, Brian G Pierce
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