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International Journal of Bioinformatics Research and Applications|March 1, 2011
RNApasta: a tool for analysis of RNA structural alignmentsRussell L Malmberg, Timothy I Shaw, Liming CaiJournal of Bioinformatics and Computational Biology|April 28, 2011
Analyzing modular RNA structure reveals low global structural entropy in microRNA sequenceTimothy I Shaw, Amir Manzour, Yingfeng Wang, et al.BMC Bioinformatics|April 28, 2012
Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgroundsYingfeng Wang, Amir Manzour, Pooya Shareghi, et al.Journal of Mathematical Biology|October 2, 2007
Rapid ab initio prediction of RNA pseudoknots via graph tree decompositionJizhen Zhao, Russell L Malmberg, Liming CaiBioinformatics (Oxford, England)|July 12, 2003
Stochastic modeling of RNA pseudoknotted structures: a grammatical approachLiming Cai, Russell L Malmberg, Yunzhou WuJournal of Theoretical Biology|November 20, 2012
Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNAAmirhossein Manzourolajdad, Yingfeng Wang, Timothy I Shaw, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 24, 2020
Human MicroRNA Target Prediction via Multi-Hypotheses LearningMohammad Mohebbi, Liang Ding, Russell L Malmberg, et al.Plos One|June 24, 2011
Mutational patterns in RNA secondary structure evolution examined in three RNA familiesAnuj Srivastava, Liming Cai, Jan Mrázek, et al.Bioinformatics (Oxford, England)|August 28, 2012
TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomesDong Zhang, Xingran Xue, Russell L Malmberg, et al.Computational Systems Bioinformatics. Computational Systems Bioinformatics Conference|March 21, 2007
Efficient annotation of non-coding RNA structures including pseudoknots via automated filtersChunmei Liu, Yinglei Song, Ping Hu, et al.Pageof 19