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JP Journal of Biostatistics|June 23, 2016
DETECTING CONFORMATIONAL DIFFERENCES BETWEEN RNA 3D STRUCTURESRyan R Rahrig, Craig L Zirbel
Bioinformatics (Oxford, England)|October 9, 2010
R3D Align: global pairwise alignment of RNA 3D structures using local superpositionsRyan R Rahrig, Neocles B Leontis, Craig L Zirbel
Nucleic Acids Research|May 30, 2013
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structuresRyan R Rahrig, Anton I Petrov, Neocles B Leontis, et al.
Molecules (Basel, Switzerland)|July 27, 2022
Lone Pair…π Contacts and Structure Signatures of r(UNCG) Tetraloops, Z-Turns, and Z-Steps: A WebFR3D SurveyCraig L Zirbel, Pascal Auffinger
RNA (New York, N.Y.)|January 26, 2026
Identification of 3D motifs in Rfam with JAR3DJames E Roll, Craig L Zirbel
European Journal of Operational Research|November 17, 2022
Seriation Using Tree-penalized Path LengthDenis A Aliyev, Craig L Zirbel
Bioinformatics (Oxford, England)|November 15, 2024
R3DMCS: a web server for visualizing structural variation in RNA motifs across experimental 3D structures from the same organism or across speciesSri Devan Appasamy, Craig L Zirbel
Nucleic Acids Research|April 26, 2011
WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifsAnton I Petrov, Craig L Zirbel, Neocles B Leontis
RNA (New York, N.Y.)|August 24, 2013
Automated classification of RNA 3D motifs and the RNA 3D Motif AtlasAnton I Petrov, Craig L Zirbel, Neocles B Leontis
Nucleic Acids Research|February 26, 2009
Frequency and isostericity of RNA base pairsJesse Stombaugh, Craig L Zirbel, Eric Westhof, et al.
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