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Bioinformatics (Oxford, England)|October 9, 2010
R3D Align: global pairwise alignment of RNA 3D structures using local superpositionsRyan R Rahrig, Neocles B Leontis, Craig L ZirbelNucleic Acids Research|May 30, 2013
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structuresRyan R Rahrig, Anton I Petrov, Neocles B Leontis, et al.Nucleic Acids Research|April 26, 2011
WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifsAnton I Petrov, Craig L Zirbel, Neocles B LeontisRNA (New York, N.Y.)|August 24, 2013
Automated classification of RNA 3D motifs and the RNA 3D Motif AtlasAnton I Petrov, Craig L Zirbel, Neocles B LeontisNucleic Acids Research|February 26, 2009
Frequency and isostericity of RNA base pairsJesse Stombaugh, Craig L Zirbel, Eric Westhof, et al.JP Journal of Biostatistics|June 23, 2016
DETECTING CONFORMATIONAL DIFFERENCES BETWEEN RNA 3D STRUCTURESRyan R Rahrig, Craig L ZirbelViruses|March 31, 2018
Allelic RNA Motifs in Regulating Systemic Trafficking of Potato Spindle Tuber ViroidRyuta Takeda, Craig L Zirbel, Neocles B Leontis, et al.The Journal of Physical Chemistry. B|October 23, 2013
Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loopMarek Havrila, Kamila Réblová, Craig L Zirbel, et al.Journal of Mathematical Biology|August 19, 2007
FR3D: finding local and composite recurrent structural motifs in RNA 3D structuresMichael Sarver, Craig L Zirbel, Jesse Stombaugh, et al.Nucleic Acids Research|June 17, 2009
Classification and energetics of the base-phosphate interactions in RNACraig L Zirbel, Judit E Sponer, Jiri Sponer, et al.Pageof 7