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Open Forum Infectious Diseases|February 2, 2026
Extensive Endemic Transmission of Multidrug-Resistant Mycobacterium tuberculosis in Bhutan: A Retrospective Genomic-Epidemiological StudyThinley Dorji, Karchung Tshering, Lila Adhikari, et al.
Nature Communications|January 4, 2023
An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistanceNorelle L Sherry, Kristy A Horan, Susan A Ballard, et al.
Plos Computational Biology|January 24, 2022
Polypolish: Short-read polishing of long-read bacterial genome assembliesRyan R Wick, Kathryn E Holt
F1000Research|February 9, 2021
Benchmarking of long-read assemblers for prokaryote whole genome sequencingRyan R Wick, Kathryn E Holt
Antimicrobial Agents and Chemotherapy|April 14, 2025
Genomics for antimicrobial resistance-progress and future directionsNorelle L Sherry, Jean Y H Lee, Stefano G Giulieri, et al.
Microbiology Spectrum|June 10, 2025
Transposon-directed insertion-site sequencing (TraDIS) analysis of Enterococcus faecium using nanopore sequencing and a WebAssembly analysis platformAlexandra L Krause, Wytamma Wirth, Adrianna M Turner, et al.
The Journal of Antimicrobial Chemotherapy|November 29, 2017
Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New ZealandRobyn S Lee, Torsten Seemann, Helen Heffernan, et al.
Msphere|March 10, 2025
The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae familyDanielle J Ingle, Calum J Walsh, Genevieve R Samuel, et al.
Microbial Genomics|November 29, 2023
Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillanceSara E Zufan, Katherine A Lau, Angela Donald, et al.
Mbio|March 5, 2015
Convergent adaptation in the dominant global hospital clone ST239 of methicillin-resistant Staphylococcus aureusSarah L Baines, Kathryn E Holt, Mark B Schultz, et al.
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