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Biorxiv : the Preprint Server for Biology|March 30, 2023
Structure-Based Neural Network Protein-Carbohydrate Interaction Predictions at the Residue LevelSamuel W Canner, Sudhanshu Shanker, Jeffrey J GrayFrontiers in Bioinformatics|July 6, 2023
Structure-based neural network protein-carbohydrate interaction predictions at the residue levelSamuel W Canner, Sudhanshu Shanker, Jeffrey J GrayBiorxiv : the Preprint Server for Biology|March 31, 2025
Predictions from Deep Learning Propose Substantial Protein-Carbohydrate InterplaySamuel W Canner, Ronald L Schnaar, Jeffrey J GrayProceedings of the National Academy of Sciences of the United States of America|May 18, 2026
Predictions from deep learning propose substantial protein-carbohydrate interplaySamuel W Canner, Ronald L Schnaar, Jeffrey J GrayBiorxiv : the Preprint Server for Biology|September 15, 2025
Evaluation of De Novo Deep Learning Models on the Protein-Sugar InteractomeSamuel W Canner, Lei Lu, Sho S Takeshita, et al.Journal of Biosciences|July 4, 2012
Determination of low-energy structures of a small RNA hairpin using Monte Carlo-based techniquesSudhanshu Shanker, Pradipta BandyopadhyayJournal of Biomolecular Structure & Dynamics|July 19, 2016
How Mg2+ ion and water network affect the stability and structure of non-Watson-Crick base pairs in E. coli loop E of 5S rRNA: a molecular dynamics and reference interaction site model (RISM) studySudhanshu Shanker, Pradipta BandyopadhyayThe Journal of Physical Chemistry. A|September 21, 2011
Monte Carlo temperature basin paving with effective fragment potential: an efficient and fast method for finding low-energy structures of water clusters (H2O)20 and (H2O)25Sudhanshu Shanker, Pradipta BandyopadhyayJournal of Chemical Information and Modeling|May 11, 2023
Predicting Protein-Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused DockingSudhanshu Shanker, Michel F SannerProteins|September 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner, et al.Pageof 18