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Molecular Biology and Evolution|July 30, 2024
Fast and Accurate Estimation of Selection Coefficients and Allele Histories from Ancient and Modern DNAAndrew H Vaughn, Rasmus NielsenMolecular Ecology|October 17, 2013
Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?Jacob E Crawford, Rasmus NielsenEvolution; International Journal of Organic Evolution|November 1, 2007
Population size changes reshape genomic patterns of diversityJohn E Pool, Rasmus NielsenScience (New York, N.Y.)|January 23, 2025
CASTER: Direct species tree inference from whole-genome alignmentsChao Zhang, Rasmus Nielsen, Siavash MirarabVirus Evolution|January 27, 2021
Synonymous mutations and the molecular evolution of SARS-CoV-2 originsHongru Wang, Lenore Pipes, Rasmus NielsenMolecular Biology and Evolution|August 19, 2005
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular levelJianzhi Zhang, Rasmus Nielsen, Ziheng YangBioinformatics (Oxford, England)|June 7, 2007
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov modelsWendy S W Wong, Rasmus NielsenGenetics|July 2, 2010
Natural selection and the distribution of identity-by-descent in the human genomeAnders Albrechtsen, Ida Moltke, Rasmus NielsenMolecular Biology and Evolution|July 16, 2025
ASTER: A Package for Large-Scale Phylogenomic ReconstructionsChao Zhang, Rasmus Nielsen, Siavash MirarabMolecular Biology and Evolution|October 17, 2008
An investigation of the statistical power of neutrality tests based on comparative and population genetic dataWeiwei Zhai, Rasmus Nielsen, Montgomery SlatkinPageof 34