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Nature Methods|May 16, 2024
Indexing and searching petabase-scale nucleotide resourcesSergey A Shiryev, Richa AgarwalaBioinformatics (Oxford, England)|October 9, 2007
Improved BLAST searches using longer words for protein seedingSergey A Shiryev, Jason S Papadopoulos, Alejandro A Schäffer, et al.Plos One|May 13, 2025
dTOURS: Dense-region tagging for outbreak detection using ratio statisticsLukas Wagner, Richa AgarwalaBMC Bioinformatics|July 22, 2021
SAUTE: sequence assembly using target enrichmentAlexandre Souvorov, Richa AgarwalaGigascience|April 22, 2020
SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guaranteesAleksandr Morgulis, Richa AgarwalaBMC Genomics|January 9, 2016
X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus speciesYingjia Shen, Domitille Chalopin, Tzintzuni Garcia, et al.Bioinformatics (Oxford, England)|March 3, 2007
COBALT: constraint-based alignment tool for multiple protein sequencesJason S Papadopoulos, Richa AgarwalaGenome Research|November 6, 2014
Single haplotype assembly of the human genome from a hydatidiform moleKaryn Meltz Steinberg, Valerie A Schneider, Tina A Graves-Lindsay, et al.Genome Biology|October 6, 2018
SKESA: strategic k-mer extension for scrupulous assembliesAlexandre Souvorov, Richa Agarwala, David J LipmanAmerican Journal of Medical Genetics. Part C, Seminars in Medical Genetics|July 31, 2003
Anabaptist genealogy databaseRicha Agarwala, Leslie G Biesecker, Alejandro A SchäfferPageof 6