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Biophysical Journal|October 9, 2014
Evolution of specificity in protein-protein interactionsOrit Peleg, Jeong-Mo Choi, Eugene I ShakhnovichCurrent Opinion in Structural Biology|November 5, 2016
Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populationsShimon Bershtein, Adrian Wr Serohijos, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 9, 2005
Imperfect DNA lesion repair in the semiconservative quasispecies model: derivation of the Hamming class equations and solution of the single-fitness peak landscapeEmmanuel Tannenbaum, James L Sherley, Eugene I ShakhnovichProteins|March 29, 2000
Hiking in the energy landscape in sequence space: a bumpy road to good foldersG Tiana, R A Broglia, E I ShakhnovichJournal of Molecular Biology|April 17, 2001
The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulationJ Shimada, E L Kussell, E I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|December 31, 2005
A simple physical model for scaling in protein-protein interaction networksEric J Deeds, Orr Ashenberg, Eugene I ShakhnovichJournal of Molecular Biology|April 21, 2004
Commitment and nucleation in the protein G transition stateIsaac A Hubner, Jun Shimada, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|May 21, 2005
Evolutionary dynamics of adult stem cells: comparison of random and immortal-strand segregation mechanismsEmmanuel Tannenbaum, James L Sherley, Eugene I ShakhnovichFolding & Design|January 1, 1996
Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice modelL A Mirny, V Abkevich, E I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|July 13, 2004
Semiconservative replication in the quasispecies modelEmmanuel Tannenbaum, Eric J Deeds, Eugene I ShakhnovichPageof 47