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Cell Systems|October 20, 2022
Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsamplingEleonora Rachtman, Shahab Sarmashghi, Vineet Bafna, et al.Bioinformatics (Oxford, England)|September 28, 2010
RAPID detection of gene-gene interactions in genome-wide association studiesDumitru Brinza, Matthew Schultz, Glenn Tesler, et al.Genetics|June 18, 2013
Learning natural selection from the site frequency spectrumRoy Ronen, Nitin Udpa, Eran Halperin, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 27, 2010
Protein-protein interaction network evaluation for identifying potential drug targetsFereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, et al.Nature Reviews. Cancer|March 16, 2019
Extrachromosomal oncogene amplification in tumour pathogenesis and evolutionRoel G W Verhaak, Vineet Bafna, Paul S MischelGenome Research|August 5, 2008
An MCMC algorithm for haplotype assembly from whole-genome sequence dataVikas Bansal, Aaron L Halpern, Nelson Axelrod, et al.Bioinformatics Advances|May 11, 2023
TRviz: a Python library for decomposing and visualizing tandem repeat sequencesJonghun Park, Eli Kaufman, Paul N Valdmanis, et al.Frontiers in Genetics|February 4, 2012
Tests of selection in pooled case-control data: an empirical studyNitin Udpa, Dan Zhou, Gabriel G Haddad, et al.Nucleic Acids Research|May 10, 2013
Reprever: resolving low-copy duplicated sequences using template driven assemblySangwoo Kim, Paul Medvedev, Tara A Paton, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 1, 2007
A decomposition theory for phylogenetic networks and incompatible charactersDan Gusfield, Vikas Bansal, Vineet Bafna, et al.Pageof 21