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Nature Reviews. Microbiology|March 31, 2018
CRISPR-based genomic tools for the manipulation of genetically intractable microorganismsRebecca S Shapiro, Alejandro Chavez, James J CollinsRegulatory Toxicology and Pharmacology : RTP|October 18, 2008
Acrylonitrile and cancer: a review of the epidemiologyPhilip Cole, Jack S Mandel, James J CollinsProceedings of the National Academy of Sciences of the United States of America|July 27, 2007
Combinatorial promoter design for engineering noisy gene expressionKevin F Murphy, Gábor Balázsi, James J CollinsElife|August 3, 2013
Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoniBo Wang, James J Collins, Phillip A NewmarkPhysical Review Letters|August 4, 2025
Essay: Using Machine Learning for Antibiotic DiscoveryCesar de la Fuente-Nunez, James J CollinsCell|March 19, 2011
Cellular decision making and biological noise: from microbes to mammalsGábor Balázsi, Alexander van Oudenaarden, James J CollinsCurrent Topics in Developmental Biology|March 26, 2022
The good, the bad, and the ugly: From planarians to parasitesTania Rozario, James J Collins, Phillip A NewmarkCurrent Opinion in Biotechnology|January 28, 2025
Machine learning for synthetic gene circuit engineeringSebastian Palacios, James J Collins, Domitilla Del VecchioMicrobiome|January 13, 2021
Lessons learned from the prenatal microbiome controversyMartin J Blaser, Suzanne Devkota, Kathy D McCoy, et al.Journal of Bacteriology|March 21, 2006
Significant gene order and expression differences in Bordetella pertussis despite limited gene content variationMary M Brinig, Craig A Cummings, Gary N Sanden, et al.Pageof 52