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Scientific Reports|February 1, 2017
The PRC2-binding long non-coding RNAs in human and mouse genomes are associated with predictive sequence featuresShiqi Tu, Guo-Cheng Yuan, Zhen ShaoGenomics|April 1, 2010
Prediction of Polycomb target genes in mouse embryonic stem cellsYingchun Liu, Zhen Shao, Guo-Cheng YuanGenome Biology|March 1, 2022
HyperChIP: identification of hypervariable signals across ChIP-seq or ATAC-seq samplesHaojie Chen, Shiqi Tu, Chongze Yuan, et al.Genome Biology|March 20, 2012
MAnorm: a robust model for quantitative comparison of ChIP-Seq data setsZhen Shao, Yijing Zhang, Guo-Cheng Yuan, et al.Genome Research|November 19, 2020
MAnorm2 for quantitatively comparing groups of ChIP-seq samplesShiqi Tu, Mushan Li, Haojie Chen, et al.Computational and Structural Biotechnology Journal|December 4, 2025
EAP: A versatile cloud-based platform for efficient quantitative analysis of large-scale ChIP/ATAC-seq datasetsGuangyong Zheng, Haojie Chen, Zhijie Guo, et al.Computational and Structural Biotechnology Journal|January 5, 2026
Corrigendum to "EAP: A versatile cloud-based platform for efficient quantitative analysis of large-scale ChIP/ATAC-seq datasets" [Comput Struct Biotechnol J 27 (2025) 5220-5233]Guangyong Zheng, Haojie Chen, Zhijie Guo, et al.Cell Discovery|October 23, 2019
MAP: model-based analysis of proteomic data to detect proteins with significant abundance changesMushan Li, Shiqi Tu, Zijia Li, et al.Wiley Interdisciplinary Reviews. Systems Biology and Medicine|February 21, 2012
Linking genome to epigenomeGuo-Cheng YuanJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 6, 2009
Targeted recruitment of histone modifications in humans predicted by genomic sequencesGuo-Cheng YuanPageof 28