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Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms|November 4, 2019
Inference of plant gene regulatory networks using data-driven methods: A practical overviewShubhada R Kulkarni, Klaas VandepoelePlant Physiology|July 27, 2019
Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin DataShubhada R Kulkarni, D Marc Jones, Klaas VandepoeleNucleic Acids Research|December 23, 2017
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site informationShubhada R Kulkarni, Dries Vaneechoutte, Jan Van de Velde, et al.Rice (New York, N.Y.)|June 1, 2017
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)Kristof De Schutter, Mariya Tsaneva, Shubhada R Kulkarni, et al.Methods in Molecular Biology (Clifton, N.J.)|December 18, 2016
A Guide to the PLAZA 3.0 Plant Comparative Genomic DatabaseKlaas VandepoelePlant Biotechnology Journal|July 31, 2019
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growthJasmien Vercruysse, Michiel Van Bel, Cristina M Osuna-Cruz, et al.Methods in Molecular Biology (Clifton, N.J.)|September 8, 2023
Characterization of Gene Regulatory Networks in Plants Using New Methods and Data TypesKlaas Vandepoele, Kerstin KaufmannThe Plant Journal : for Cell and Molecular Biology|September 25, 2021
Multi-omics network-based functional annotation of unknown Arabidopsis genesThomas Depuydt, Klaas VandepoeleBioinformatics (Oxford, England)|December 28, 2018
Curse: building expression atlases and co-expression networks from public RNA-Seq dataDries Vaneechoutte, Klaas VandepoeleJournal of Experimental Botany|May 30, 2024
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responsesXiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, et al.Pageof 18