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Frontiers in Molecular Biosciences
|
July 28, 2022
PASSer2.0: Accurate Prediction of Protein Allosteric Sites Through Automated Machine Learning
Sian Xiao, Hao Tian, Peng Tao
Trends in Biochemical Sciences
|
December 23, 2022
Machine learning and protein allostery
Sian Xiao, Gennady M Verkhivker, Peng Tao
Nucleic Acids Research
|
April 27, 2023
PASSer: fast and accurate prediction of protein allosteric sites
Hao Tian, Sian Xiao, Xi Jiang, et al.
Arxiv
|
February 13, 2023
PASSerRank: Prediction of Allosteric Sites with Learning to Rank
Hao Tian, Sian Xiao, Xi Jiang, et al.
Journal of Computational Biophysics and Chemistry
|
June 3, 2024
Assessments of Variational Autoencoder in Protein Conformation Exploration
Sian Xiao, Zilin Song, Hao Tian, et al.
Journal of Computational Chemistry
|
August 10, 2023
PASSerRank: Prediction of allosteric sites with learning to rank
Hao Tian, Sian Xiao, Xi Jiang, et al.
Biorxiv : the Preprint Server for Biology
|
February 20, 2025
Accurate Characterization of the Allosteric Energy Landscapes, Binding Hotspots and Long-Range Communications for KRAS Complexes with Effector Proteins : Integrative Approach Using Microsecond Molecular Dynamics, Deep Mutational Scanning of Binding Energetics and Allosteric Network Modeling
Sian Xiao, Mohammed Alshahrani, Guang Hu, et al.
Biorxiv : the Preprint Server for Biology
|
June 9, 2023
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variants Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
Protein Science : a Publication of the Protein Society
|
July 17, 2025
Exploring binding and allosteric energy landscapes for the KRAS interactions with effector proteins using Markov state modeling of conformational ensembles and allosteric network modeling
Sian Xiao, Mohammed Alshahrani, Guang Hu, et al.
International Journal of Molecular Sciences
|
May 13, 2023
From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on "Allosteric Intersection" of Biochemical and Big Data Approaches
Gennady Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
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Search research articles
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Showing results (1-10 of 30) with videos related to
Sort By:
Page
of 3
Frontiers in Molecular Biosciences
|
July 28, 2022
PASSer2.0: Accurate Prediction of Protein Allosteric Sites Through Automated Machine Learning
Sian Xiao, Hao Tian, Peng Tao
Trends in Biochemical Sciences
|
December 23, 2022
Machine learning and protein allostery
Sian Xiao, Gennady M Verkhivker, Peng Tao
Nucleic Acids Research
|
April 27, 2023
PASSer: fast and accurate prediction of protein allosteric sites
Hao Tian, Sian Xiao, Xi Jiang, et al.
Arxiv
|
February 13, 2023
PASSerRank: Prediction of Allosteric Sites with Learning to Rank
Hao Tian, Sian Xiao, Xi Jiang, et al.
Journal of Computational Biophysics and Chemistry
|
June 3, 2024
Assessments of Variational Autoencoder in Protein Conformation Exploration
Sian Xiao, Zilin Song, Hao Tian, et al.
Journal of Computational Chemistry
|
August 10, 2023
PASSerRank: Prediction of allosteric sites with learning to rank
Hao Tian, Sian Xiao, Xi Jiang, et al.
Biorxiv : the Preprint Server for Biology
|
February 20, 2025
Accurate Characterization of the Allosteric Energy Landscapes, Binding Hotspots and Long-Range Communications for KRAS Complexes with Effector Proteins : Integrative Approach Using Microsecond Molecular Dynamics, Deep Mutational Scanning of Binding Energetics and Allosteric Network Modeling
Sian Xiao, Mohammed Alshahrani, Guang Hu, et al.
Biorxiv : the Preprint Server for Biology
|
June 9, 2023
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variants Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
Protein Science : a Publication of the Protein Society
|
July 17, 2025
Exploring binding and allosteric energy landscapes for the KRAS interactions with effector proteins using Markov state modeling of conformational ensembles and allosteric network modeling
Sian Xiao, Mohammed Alshahrani, Guang Hu, et al.
International Journal of Molecular Sciences
|
May 13, 2023
From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on "Allosteric Intersection" of Biochemical and Big Data Approaches
Gennady Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
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of 3