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Frontiers in Molecular Biosciences|July 25, 2022
Implementing a Scoring Function Based on Interaction Fingerprint for Autogrow4: Protein Kinase CK1δ as a Case StudyMatteo Pavan, Silvia Menin, Davide Bassani, et al.
Journal of Chemical Information and Modeling|October 31, 2022
Qualitative Estimation of Protein-Ligand Complex Stability through Thermal Titration Molecular Dynamics SimulationsMatteo Pavan, Silvia Menin, Davide Bassani, et al.
International Journal of Molecular Sciences|February 25, 2023
Thermal Titration Molecular Dynamics (TTMD): Not Your Usual Post-Docking RefinementSilvia Menin, Matteo Pavan, Veronica Salmaso, et al.
Cells|October 28, 2025
Adenosine Receptors in Neuroinflammation and NeurodegenerationVeronica Salmaso, Silvia Menin, Stefano Moro, et al.
Frontiers in Molecular Biosciences|November 29, 2023
Thermal titration molecular dynamics (TTMD): shedding light on the stability of RNA-small molecule complexesAndrea Dodaro, Matteo Pavan, Silvia Menin, et al.
Journal of Chemical Information and Modeling|January 17, 2025
Post-Docking Refinement of Peptide or Protein-RNA Complexes Using Thermal Titration Molecular Dynamics (TTMD): A Stability InsightAndrea Dodaro, Gianluca Novello, Silvia Menin, et al.
Journal of Chemical Information and Modeling|May 7, 2026
Structuring Disorder via Supervised Molecular Dynamics: Uncovering Arginine-Glycine-Glycine-Mediated Ribonucleic Acid-Intrinsically Disordered Region Recognition MechanismsGianluca Novello, Andrea Dodaro, Chiara Cavastracci Strascia, et al.
Journal of Chemical Information and Modeling|January 21, 2025
Thermal Titration Molecular Dynamics: The Revenge of the FragmentsMatteo Pavan, Silvia Menin, Andrea Dodaro, et al.
Biorxiv : the Preprint Server for Biology|October 9, 2023
A comprehensive study of SARS-CoV-2 main protease (Mpro) inhibitor-resistant mutants selected in a VSV-based systemFrancesco Costacurta, Andrea Dodaro, David Bante, et al.
Plos Pathogens|September 11, 2024
A comprehensive study of SARS-CoV-2 main protease (Mpro) inhibitor-resistant mutants selected in a VSV-based systemFrancesco Costacurta, Andrea Dodaro, David Bante, et al.
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