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Bioinformatics (Oxford, England)|October 10, 2003
HMM sampling and applications to gene finding and alternative splicingSimon L Cawley, Lior PachterJournal of Comparative Physiology. A, Neuroethology, Sensory, Neural, and Behavioral Physiology|August 29, 2025
A plea for academic truthLior PachterNature Methods|November 20, 2012
Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts, Lior PachterBriefings in Bioinformatics|May 11, 2002
The computational challenges of applying comparative-based computational methods to whole genomesInna Dubchak, Lior PachterPhysical Review. E|September 18, 2020
Special function methods for bursty models of transcriptionGennady Gorin, Lior PachterGenome Medicine|November 25, 2011
RNA-Seq and find: entering the RNA deep fieldAdam Roberts, Lior PachterGenome Biology|April 8, 2006
Reference based annotation with GeneMapperSourav Chatterji, Lior PachterPlos Computational Biology|August 20, 2005
Bioinformatics for whole-genome shotgun sequencing of microbial communitiesKevin Chen, Lior PachterMolecular Cell|October 6, 2018
RNA Velocity: Molecular Kinetics from Single-Cell RNA-SeqValentine Svensson, Lior PachterPageof 20