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Molecular Biology and Evolution|November 2, 2002
A novel use of equilibrium frequencies in models of sequence evolutionNick Goldman, Simon WhelanGenetics|September 3, 2004
Estimating the frequency of events that cause multiple-nucleotide changesSimon Whelan, Nick GoldmanBioinformatics (Oxford, England)|August 13, 2003
Pandit: a database of protein and associated nucleotide domains with inferred treesSimon Whelan, Paul I W de Bakker, Nick GoldmanNucleic Acids Research|December 31, 2005
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred treesSimon Whelan, Paul I W de Bakker, Emmanuel Quevillon, et al.Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|October 15, 2008
The genetic code can cause systematic bias in simple phylogenetic modelsSimon WhelanSystematic Biology|September 13, 2007
New approaches to phylogenetic tree search and their application to large numbers of protein alignmentsSimon WhelanMolecular Biology and Evolution|May 27, 2008
Spatial and temporal heterogeneity in nucleotide sequence evolutionSimon WhelanBioinformatics (Oxford, England)|November 17, 2007
Determination and validation of principal gene productsMichael L Tress, Jan-Jaap Wesselink, Adam Frankish, et al.Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|October 15, 2008
A model of evolution and structure for multiple sequence alignmentAri Löytynoja, Nick GoldmanPageof 12