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Genetics|October 30, 2004
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sitesWendy S W Wong, Ziheng Yang, Nick Goldman, et al.
Methods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignmentStefano Iantorno, Kevin Gori, Nick Goldman, et al.
Plos Genetics|March 2, 2021
Short-range template switching in great ape genomes explored using pair hidden Markov modelsConor R Walker, Aylwyn Scally, Nicola De Maio, et al.
Systematic Biology|July 27, 2007
Experimental design criteria in phylogenetics: where to add taxaKoen Geuten, Tim Massingham, Paul Darius, et al.
BMC Proceedings|September 20, 2014
Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifsMarek Kultys, Lydia Nicholas, Roland Schwarz, et al.
Systematic Biology|September 12, 2014
ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution modelsSimon Whelan, James E Allen, Benjamin P Blackburne, et al.
Systematic Biology|January 15, 2011
What's in a likelihood? Simple models of protein evolution and the contribution of structurally viable reconstructions to the likelihoodClemens Lakner, Mark T Holder, Nick Goldman, et al.
Systematic Biology|June 27, 2023
DNA Sequences Are as Useful as Protein Sequences for Inferring Deep PhylogeniesPaschalia Kapli, Ioanna Kotari, Maximilian J Telford, et al.
Frontiers in Plant Science|May 31, 2012
Protein Phylogenetic Analysis of Ca(2+)/cation Antiporters and Insights into their Evolution in PlantsLaura Emery, Simon Whelan, Kendal D Hirschi, et al.
Molecular Biology and Evolution|October 24, 2025
Highly Recurrent Multinucleotide Mutations in SARS-CoV-2Nicola De Maio, Olivier Anoufa, Kyle Smith, et al.
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