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Bioinformatics (Oxford, England)|June 15, 2015
Reconstruction of clonal trees and tumor composition from multi-sample sequencing dataMohammed El-Kebir, Layla Oesper, Hannah Acheson-Field, et al.Genome Biology|August 9, 2015
CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancerMark D M Leiserson, Hsin-Ta Wu, Fabio Vandin, et al.Biorxiv : the Preprint Server for Biology|December 22, 2025
Inferring Cell Differentiation Dynamics with Unobserved ProgenitorsWilliam Howard-Snyder, Richard Zhang, Henri Schmidt, et al.BMC Bioinformatics|April 28, 2012
Reconstructing cancer genomes from paired-end sequencing dataLayla Oesper, Anna Ritz, Sarah J Aerni, et al.Bioinformatics (Oxford, England)|September 4, 2007
Optimization of primer design for the detection of variable genomic lesions in cancerAli Bashir, Yu-Tsueng Liu, Benjamin J Raphael, et al.Current Opinion in Genetics & Development|November 30, 2013
Network analysis of GWAS dataMark D M Leiserson, Jonathan V Eldridge, Sohini Ramachandran, et al.IEEE Transactions on Visualization and Computer Graphics|October 27, 2010
Gremlin: an interactive visualization model for analyzing genomic rearrangementsTrevor M O'Brien, Anna M Ritz, Benjamin J Raphael, et al.BMC Bioinformatics|April 23, 2011
Detection of recurrent rearrangement breakpoints from copy number dataAnna Ritz, Pamela L Paris, Michael M Ittmann, et al.Cell Genomics|April 6, 2022
SuperDendrix algorithm integrates genetic dependencies and genomic alterations across pathways and cancer typesTae Yoon Park, Mark D M Leiserson, Gunnar W Klau, et al.BMC Bioinformatics|February 11, 2012
Identification of polymorphic inversions from genotypesAlejandro Cáceres, Suzanne S Sindi, Benjamin J Raphael, et al.Pageof 19