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Nucleic Acids Research|May 20, 2006
Predicting RNA pseudoknot folding thermodynamicsSong Cao, Shi-Jie ChenBiophysical Journal|May 20, 2009
A new computational approach for mechanical folding kinetics of RNA hairpinsSong Cao, Shi-Jie ChenRNA (New York, N.Y.)|February 25, 2009
Predicting structures and stabilities for H-type pseudoknots with interhelix loopsSong Cao, Shi-Jie ChenThe Journal of Physical Chemistry. B|March 19, 2011
Physics-based de novo prediction of RNA 3D structuresSong Cao, Shi-Jie ChenNucleic Acids Research|February 7, 2012
Predicting kissing interactions in microRNA-target complex and assessment of microRNA activitySong Cao, Shi-Jie ChenRNA (New York, N.Y.)|October 27, 2011
Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signalSong Cao, Shi-Jie ChenRNA Biology|March 16, 2012
A domain-based model for predicting large and complex pseudoknotted structuresSong Cao, Shi-Jie ChenRNA (New York, N.Y.)|October 28, 2005
Predicting RNA folding thermodynamics with a reduced chain representation modelSong Cao, Shi-Jie ChenJournal of Molecular Biology|January 18, 2006
Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomesSong Cao, Shi-Jie ChenPageof 42