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Cell|August 28, 2016
Toward Accurate and Quantitative Comparative MetagenomicsStephen Nayfach, Katherine S PollardGenome Biology|April 9, 2015
Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiomeStephen Nayfach, Katherine S PollardBioinformatics (Oxford, England)|June 25, 2015
MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiomeStephen Nayfach, Michael A Fischbach, Katherine S PollardGenome Biology|August 10, 2023
Maast: genotyping thousands of microbial strains efficientlyZhou Jason Shi, Stephen Nayfach, Katherine S PollardPlos Computational Biology|August 10, 2018
Phylogeny-corrected identification of microbial gene families relevant to human gut colonizationPatrick H Bradley, Stephen Nayfach, Katherine S PollardSTAR Protocols|March 1, 2023
Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-ProZhou Jason Shi, Stephen Nayfach, Katherine S PollardGenome Research|November 3, 2016
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeographyStephen Nayfach, Beltran Rodriguez-Mueller, Nandita Garud, et al.Plos One|October 18, 2018
A most wanted list of conserved microbial protein families with no known domainsStacia K Wyman, Aram Avila-Herrera, Stephen Nayfach, et al.Bioinformatics (Oxford, England)|November 2, 2022
MIDAS2: Metagenomic Intra-species Diversity Analysis SystemChunyu Zhao, Boris Dimitrov, Miriam Goldman, et al.Msystems|May 18, 2019
A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut MicrobiomeCourtney R Armour, Stephen Nayfach, Katherine S Pollard, et al.Pageof 26