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BMC Bioinformatics|August 5, 2022
DAGBagM: learning directed acyclic graphs of mixed variables with an application to identify protein biomarkers for treatment response in ovarian cancerShrabanti Chowdhury, Ru Wang, Qing Yu, et al.Biorxiv : the Preprint Server for Biology|August 8, 2025
Baseline expression of c-Myc defines the tissue specificity of oncogenic K-RasOlesja Popow, Qing Yu, Clarance Yapp, et al.Molecular & Cellular Proteomics : MCP|September 4, 2004
Phosphoproteomic analysis of the developing mouse brainBryan A Ballif, Judit Villén, Sean A Beausoleil, et al.Proceedings of the National Academy of Sciences of the United States of America|September 3, 2004
Tumor-promoting phorbol esters and activated Ras inactivate the tuberous sclerosis tumor suppressor complex via p90 ribosomal S6 kinasePhilippe P Roux, Bryan A Ballif, Rana Anjum, et al.Nature Biotechnology|September 12, 2006
A probability-based approach for high-throughput protein phosphorylation analysis and site localizationSean A Beausoleil, Judit Villén, Scott A Gerber, et al.Genes & Development|December 6, 2008
The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8Dominique Helmlinger, Samuel Marguerat, Judit Villén, et al.Biorxiv : the Preprint Server for Biology|January 8, 2024
Bidirectional substrate shuttling between the 26S proteasome and the Cdc48 ATPase promotes protein degradationHao Li, Zhejian Ji, Joao A Paulo, et al.Current Biology : CB|November 24, 2005
Cdc28-dependent regulation of the Cdc5/Polo kinaseEric M Mortensen, Wilhelm Haas, Melanie Gygi, et al.Journal of Proteome Research|May 27, 2021
A Compendium of Murine (Phospho)Peptides Encompassing Different Isobaric Labeling and Data Acquisition StrategiesOlesja Popow, Xinyue Liu, Kevin M Haigis, et al.Journal of Proteome Research|September 2, 2006
Identification of 14-3-3epsilon substrates from embryonic murine brainBryan A Ballif, Zhongwei Cao, Daniel Schwartz, et al.Pageof 446