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Mitochondrial DNA. Part B, Resources|January 21, 2021
The complete mitochondrial genome of Hine's emerald dragonfly (<i>Somatochlora hineana</i> Williamson) via NGS sequencingCraig Jackson, Sunnie Grace McCalla, Jon Amberg, et al.
Biorxiv : the Preprint Server for Biology|July 15, 2025
Uncovering Functional Gene Regulatory Networks in Bulk and Single-Cell Data through Robust Transcription Factor Activity Estimation and Model-Guided Experimental ValidationAlireza Fotuhi Siahpirani, Sunnie Grace McCalla, Saptarshi Pyne, et al.
G3 (Bethesda, Md.)|January 10, 2023
Identifying strengths and weaknesses of methods for computational network inference from single-cell RNA-seq dataSunnie Grace McCalla, Alireza Fotuhi Siahpirani, Jiaxin Li, et al.
Nature Communications|May 27, 2023
Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasetsShilu Zhang, Saptarshi Pyne, Stefan Pietrzak, et al.
Cell Reports|May 9, 2019
Defining Reprogramming Checkpoints from Single-Cell Analyses of Induced PluripotencyKhoa A Tran, Stefan J Pietrzak, Nur Zafirah Zaidan, et al.
Science Advances|September 30, 2022
Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patternsNisha R Iyer, Junha Shin, Stephanie Cuskey, et al.
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