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Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 27, 2026
Session Introduction: Biological molecular function: methods and benchmarks for finding function in biological dark matterJason E McDermott, Yana Bromberg, Hannah Carter, et al.BMC Biophysics|August 18, 2017
Modeling of RAS complexes supports roles in cancer for less studied partnersH Billur Engin, Daniel Carlin, Dexter Pratt, et al.Molecular & Cellular Oncology|March 1, 2018
MHC-I genotype drives early immune selection of oncogenic mutationsRachel Marty, Nicola de Prisco, Hannah Carter, et al.PNAS Nexus|March 13, 2023
Transcriptional analysis links B cells and TERT expression to favorable prognosis in head and neck cancerSu Xian, Magalie Dosset, Andrea Castro, et al.International Journal of Molecular Sciences|January 11, 2025
Identifying Strong Neoantigen MHC-I/II Binding Candidates for Targeted Immunotherapy with SINEJoseph Bendik, Andrea Castro, Joseph Califano, et al.Bioinformatics (Oxford, England)|July 30, 2024
GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistenciesJames V Talwar, Adam Klie, Meghana S Pagadala, et al.Biorxiv : the Preprint Server for Biology|August 8, 2025
NeoPrecis: Enhancing Immunotherapy Response Prediction through Integration of Qualified Immunogenicity and Clonality-Aware Neoantigen LandscapesKo-Han Lee, Timothy J Sears, Maurizio Zanetti, et al.BMC Bioinformatics|May 29, 2019
Rare variant phasing using paired tumor:normal sequence dataAlexandra R Buckley, Trey Ideker, Hannah Carter, et al.Nature Communications|January 23, 2026
NeoPrecis: enhancing immunotherapy response prediction through integration of qualified immunogenicity and clonality-aware neoantigen landscapesKo-Han Lee, Timothy J Sears, Maurizio Zanetti, et al.Journal of Molecular Biology|June 18, 2018
The Emerging Potential for Network Analysis to Inform Precision Cancer MedicineKivilcim Ozturk, Michelle Dow, Daniel E Carlin, et al.Pageof 18